Installing Software
====================

Ideally, you should use a package manager to install software. Many packages are now available in Bioconda, and here are instructions on how to install and use it: `<https://help.cropdiversity.ac.uk/bioconda.html>`_ .

If you are working on a mac OX, you could also use `Homebrew <https://brew.sh>`_.

Here is a link to a nice glossary of terms used in the command line from Data Carpentries: `<https://datacarpentry.org/shell-genomics/reference.html>`_